Staying in Labuan Bajo today isn’t just about finding a place to rest, it’s about how you can immerse yourself more deeply in nature. One experience gaining popularity among travelers is the overwater hotel in Labuan Bajo, accommodations built directly above the sea, offering an entirely different stay compared to conventional hotels. While cruising phinisi yachts remains a unique option, modern resorts that remain gracefully anchored in serene waters are now available, creating an exclusive retreat amid the stunning natural scenery.
If you’re planning a getaway with a calmer, more intimate atmosphere, blending seamlessly with the beauty of Flores’ seas, an overwater hotel should be on your radar. In this article, you’ll discover some of the best overwater hotels in Labuan Bajo, from luxurious resorts to phinisi yacht alternatives for a sailing experience. Read on to help you find the accommodation that perfectly matches your travel style.
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What Is an Overwater Hotel in Labuan Bajo?
An overwater hotel is a type of accommodation built directly atop the sea, offering a refreshingly different way to stay. In Labuan Bajo, this concept goes beyond the traditional cruising phinisi, it also includes modern resorts that remain permanently moored in calm waters. You’ll enjoy five-star comfort while waking up to the vast ocean views right from your room. These hotels are thoughtfully located: peaceful, yet close to the region’s most beautiful spots.
Unlike boats that sail from place to place, fixed overwater hotels allow you to rest more steadily and relax more deeply. They’re ideal for travelers who want full immersion in the sea’s tranquility without moving every day. Some resorts offer private infinity pools, spa services, and direct access to snorkeling or kayaking. With all their advantages, overwater hotels in Labuan Bajo are a compelling choice for those seeking a calm, memorable, and nature-connected escape.
Best Overwater Hotels in Labuan Bajo
Labuan Bajo’s variety of overwater accommodations means your floating stay can be tailored to personal taste. Each property offers a unique blend of design, location, and amenities. Here are some top picks worth considering for your next getaway.
1. Ta’aktana Resort
As one of the most exclusive overwater hotels in Labuan Bajo, Ta’aktana blends modern luxury with rich local heritage. Part of Marriott’s Luxury Collection, it draws inspiration from Manggarai traditions and features elegant design, infinity pools, spa services, and personalized offerings. Located just steps from the departure points for Komodo National Park tours, it’s perfect for crafting seamless exploration schedules. The tranquil atmosphere and sweeping sea vistas elevate the entire stay.
The resort’s floating villas are designed for ultimate comfort, equipped with panoramic views of the sea and surrounding islands. Beyond relaxation, you can participate in cultural activities curated to introduce you to the authentic essence of Flores. Whether you’re traveling solo, as a couple, or with family, Ta’aktana offers the perfect sanctuary for relaxation before or after exploration. If you’re searching for an overwater hotel in Labuan Bajo that combines tranquility with cultural richness, Ta’aktana is the answer.
2. Katamaran Komodo
Looking for a peaceful stay that’s modern yet eco-conscious? Katamaran Komodo fits the bill. This five-star overwater hotel features minimalist, boutique-style design and a sustainability-focused approach, ideal for travelers who crave luxury without compromising environmental responsibility. Located close to Labuan Bajo’s heart, it offers easy access to activities, including trips to Komodo National Park, while maintaining a private, serene ambiance just off the coast.
The overwater bungalows and ocean-view suites give you breathtaking views of nearby tropical islands and crystal-clear waters. Relax on your private deck, snorkel straight from the shore, or enjoy dinner at the resort’s highly regarded restaurant. With an eco-conscious ethos woven into every aspect of its service, you can indulge in luxury guilt-free. Whether it’s for a honeymoon, a peaceful retreat, or an adventure in Flores’ natural beauty, Katamaran Komodo strikes the perfect balance of comfort, scenic beauty, and convenient access to Komodo.
3. 69 Resort Labuan Bajo
If you’ve ever dreamed of a Maldives-like stay without leaving Indonesia, 69 Resort Labuan Bajo might be what you’re looking for. This overwater hotel offers distinctive rooms that float directly above the sea, with stunning blue water views from every angle. The setting is tranquil, private, and ideal for travelers seeking a peaceful escape from everyday life. Although still under construction, its fresh and exclusive concept has already sparked widespread curiosity.
Slated to open on September 1, 2025, 69 Resort will feature amenities like private pools, a tropical-themed restaurant, and butler service for utmost comfort. You’ll also be able to enjoy water-based activities like snorkeling and diving or opt for honeymoon packages if you’re celebrating something special. Importantly, this resort embraces an eco-friendly philosophy, perfect for travelers who want luxury without compromising the planet. If you’re aiming for a stylish, comfortable stay right above the water, 69 Resort deserves a spot on your itinerary.
Read more: Hotel Recommendations in Labuan Bajo: From Budget to Luxury Stays
Why Try an Overwater Hotel in Labuan Bajo?
With their unique designs and waterside settings, overwater hotels deliver more than just a place to stay. Before you pick the perfect one, here are compelling reasons to consider this type of accommodation:
- Immersion in Nature
Staying over the water allows you to feel fully enveloped by Labuan Bajo’s natural beauty. From your room, you’ll wake up to shimmering sea and dramatic island landscapes. This immersive perspective makes you feel part of the landscape, not just a visitor. - Privacy and Serenity
With limited rooms and fewer guests, these overwater resorts offer a much quieter and more exclusive stay. No bustling crowds, just space to enjoy your moments of solitude. They’re ideal for travelers seeking rest and deep relaxation amid Flores’ peaceful coastal ambiance. - Direct Water Access
One of the biggest perks of an overwater hotel in Labuan Bajo is stepping directly into the sea from your room. Be it snorkeling, swimming, or kayaking, you can do it all without leaving the property. Many resorts even provide equipment and decks specifically for water activities. - Sunrise, Sunset, and Scenic Views
Imagine lounging on your overwater balcony, coffee in hand, watching the first rays of dawn or indulging in the fiery hues of sunset, all without getting out of bed. The natural rhythms of the sea and sky become your backdrop, offering simple yet profound pleasures.
Phinisi Yachts: An Alternative Floating Hotel Experience
If you’re looking for something different from fixed overwater hotels, staying aboard a phinisi yacht might be the perfect alternative. These traditional Indonesian sailing vessels offer a unique blend of accommodation and adventure. Instead of staying in one spot, you’ll wake up to a new island view each morning as you explore some of the most iconic destinations around Labuan Bajo, all while enjoying the comforts of a well-appointed cabin and personalized service.
Phinisi yachts are ideal for those who want a more dynamic and immersive way to experience the beauty of Komodo National Park. With IndonesiaJuara Trip, you can join a Labuan Bajo Tour aboard a luxury phinisi that’s been curated for both style and safety. It’s a great alternative to overwater resorts, especially if you prefer combining exploration with accommodation. Whether you’re sailing to Padar Island, Pink Beach, or Manta Point, a phinisi yacht transforms your journey into a floating retreat.
Read more: Komodo Island Complete Guide with IndonesiaJuara Trip
Elevate Your Trip with a Meaningful Stay in Overwater Hotel
Staying at an overwater hotel in Labuan Bajo is more than just finding a room, it’s about savoring a deeper connection to nature. Each property brings its own charm: high-end luxury blended with cultural insight, eco-friendly minimalism, or private Maldives-like ambiance. You can tailor your choice based on whether you want to rest before exploration or recharge afterward. Either way, the experience becomes a cherished part of your journey.
To book one of these stunning accommodations, check out Luxury Accommodation by Komodo Luxury, which curates a selection of high-end resorts with top-tier standards. These overwater hotels are ideal places to stay either before or after joining the Labuan Bajo Tour with IndonesiaJuara Trip aboard a phinisi yacht. With the right lodging, your time in Labuan Bajo will feel more complete, comfortable, well-planned, and unforgettable.
